PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243163.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 354aa    MW: 39845.9 Da    PI: 6.8606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243163.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14161207354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  XP_008243163.1 161 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 207
                     79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-12161207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14162216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14162214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.41E-5171210No hitNo description
Gene3DG3DSA:3.30.70.2609.4E-4244293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMCGKKEDQG ECSQSVQNLQ AFQEHLFLQQ QHQMQQQQHQ MQQQQHHQQQ GLIFPHDHQA  60
PPPILQPWTL PPIHTFNPSA HDQYLLPTPP PPIPSSSSYA SFFNRRAPLX XXXEHHHHLR  120
ILSETLGPMV QPGSAPFGLQ AELGKLTAQE IMDAKALAAS KSHSEAERRR RERINNHLAK  180
LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV PTEMDELIVD DASDEDGKFV  240
IKASLCCEDR SDLLPDLIKT LKALRLRTLK AEITTLGGRV KNVLFITGEE DSSSSGGEQE  300
QQHQMPHQHQ QQQYCISSIE EALKAVMEKT GGEHEQSSSG SVKRQRTNNI NILN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894070.0KP689407.1 Prunus pseudocerasus isolate Unigene10252 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243163.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-110BH030_ARATH; Transcription factor bHLH30
TrEMBLM5XHM80.0M5XHM8_PRUPE; Uncharacterized protein
STRINGVIT_01s0011g02940.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-88bHLH family protein